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Genomics on a phylogeny: Evolution of Genes and Genomes in the Genus Drosophila.
Drosophila Comparative Genome Sequencing and Analysis Consortium (including CD Smith & GH Karpen). Nature (in press)
The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen (2007). Science 316, 1586-1591.
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Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Roger A. Hoskins,* Joseph W. Carlson,* Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker (2007). Science 316, 1625-1628.
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Improved repeat identification and masking in Dipterans
Christopher D. Smith, Robert C. Edgar, Mark D. Yandell, Douglas R. Smith, Susan E. Celniker, Eugene W. Myers, and Gary H. Karpen (2007). Gene 389(1): 1-9.
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Rapid and Efficient cDNA Library Screening by Self-Ligation of Inverse PCR Products (SLIP)
Hoskins, R.A., M. Stapleton, R.A. George, C. Yu, K.H. Wan, et al., Nucleic Acids Res., 2005.
The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes
Bellen, H.J., Levis, R.W., Liao, G., He, Y., Carlson, J.W., Tsang, G., Evans-Holm, M., Hiesinger, P.R., Schulze, K.L., Rubin, G.M., Hoskins, R.A., and Spradling, A.C.
Genetics (2004) 167:761-781
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Sequence analysis of a functional Drosophila centromere
Sun, X. Le, H, Wahlstrom, J., and Karpen, G. H.
Genome Research (2003) 13, 182-194.
Genetics of P element transposition into Drosophila centric heterochromatin
Konev, S., Yan, C.M., O'Hagan, E., Tickoo, S., and Karpen, G.H.
Genetics (2003) 165, 2039-53
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Efficient recovery of centric heterochromatin P insertions in Drosophila
Yan, C.M., Dobie, K., Le, H.D., Konev, A., and Karpen, G.H.
Genetics (2002) 161, 217-229.
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Finishing a whole genome shot gun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
S.E. Celniker, D.A. Wheeler, B. Kronmiller, J.W. Carlson, A. Halpern, S. Patel, M. Adams, M. Champe, S.P. Dugan, E. Frise, A. Hodgson , R.A. George, R.A. Hoskins, T. Laverty, D.M. Muzny, C.R. Nelson, J.M. Pacleb, S. Park, B.D. Pfeiffer, S. Richards, E.J. Sodergren, R. Svirskas, P.E. Tabor, K. Wan, M. Stapleton, G.G. Sutton, C. Venter, G. Weinstock, S.E. Scherer, E.W. Myers, R.A. Gibbs and G.M. Rubin
Genome Biology (2002) 3(12):research0079.1-0079.14
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Heterochromatic sequences in a Drosophila whole genome shotgun assembly
R.A. Hoskins, C.D. Smith, J.W. Carlson, A.B. Carvalho, A. Halpern, J.S. Kaminker, C. Kennedy, C.J. Mungall, B.A. Sullivan, G.G. Sutton, J.C. Yasuhara, B.T. Wakimoto, E.W. Myers, S.E. Celniker, G.M. Rubin and G.H. Karpen
Genome Biology (2002) 3(12):research0085.1-0085.16
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